ClinVar 임상 비교
AlphaMissense AI 예측 vs ClinVar 실제 임상 분류 — 일치/불일치 분석
ClinVar 변이 (서브셋)
319,822
우리 보유 유전자만
커버 유전자
308
병원성/가능 변이
56,770
AM과 교차 가능
154,518
단백질 변이 추출
EGFR: AM vs ClinVar 일치도
500 변이✓ 둘 다 병원성
17
✓ 둘 다 양성
8
⚠ CV=병원성 / AM=양성
1
⚠ CV=양성 / AM=병원성
1
— AM 미적재
473
AM ↔ ClinVar 비교 가능 변이 27건 중 25건 일치 / 2건 불일치 — 일치도 92.6%
변이별 비교
Max 500| 변이 | ClinVar 분류 | AM 점수 | AM 분류 | 일치 | |
|---|---|---|---|---|---|
| A237F | Likely pathogenic | 0.945 | pathogenic | ✓ | 해석 → |
| A763T | Pathogenic | 0.972 | pathogenic | ✓ | 해석 → |
| C1049* | Pathogenic | — | 미적재 | 해석 → | |
| C326F | Pathogenic | 0.994 | pathogenic | ✓ | 해석 → |
| C535* | Pathogenic | — | 미적재 | 해석 → | |
| E330K | Conflicting classifications of pathogeni | 0.123 | benign | 해석 → | |
| E513* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| E709A | Uncertain significance | 0.900 | pathogenic | 해석 → | |
| E884* | Pathogenic | — | 미적재 | 해석 → | |
| E931* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| G428D | Pathogenic | 0.998 | pathogenic | ✓ | 해석 → |
| G598R | Pathogenic | 0.701 | pathogenic | ✓ | 해석 → |
| G719A | Pathogenic | 0.993 | pathogenic | ✓ | 해석 → |
| G719C | Pathogenic; drug response | 0.999 | pathogenic | ✓ | 해석 → |
| G719R | Likely pathogenic; drug response | 1.000 | pathogenic | ✓ | 해석 → |
| G719S | Uncertain significance; drug response | 0.998 | pathogenic | 해석 → | |
| G796S | Conflicting classifications of pathogeni | 0.945 | pathogenic | 해석 → | |
| G863S | Uncertain significance | 0.187 | benign | 해석 → | |
| H835L | Conflicting classifications of pathogeni | 0.998 | pathogenic | 해석 → | |
| I365N | Pathogenic | 0.999 | pathogenic | ✓ | 해석 → |
| I646F | Likely pathogenic | 0.204 | benign | ⚠ | 해석 → |
| K293* | Pathogenic | — | 미적재 | 해석 → | |
| K852T | Likely pathogenic | 0.894 | pathogenic | ✓ | 해석 → |
| L833F | Likely pathogenic | 0.972 | pathogenic | ✓ | 해석 → |
| L833V | Conflicting classifications of pathogeni | 0.625 | pathogenic | 해석 → | |
| L858R | drug response | 0.997 | pathogenic | 해석 → | |
| L861Q | Likely pathogenic; drug response | 0.997 | pathogenic | ✓ | 해석 → |
| L907* | Pathogenic | — | 미적재 | 해석 → | |
| N1184K | Conflicting classifications of pathogeni | 0.282 | benign | 해석 → | |
| P596S | Pathogenic | 0.796 | pathogenic | ✓ | 해석 → |
| Q1021* | Pathogenic | — | 미적재 | 해석 → | |
| Q52* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| Q71* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| Q791* | Pathogenic | — | 미적재 | 해석 → | |
| Q849* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| Q982L | Conflicting classifications of pathogeni | 0.344 | ambiguous | 해석 → | |
| R255* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| R309* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| R531* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| R669* | Pathogenic | — | 미적재 | 해석 → | |
| R776C | Uncertain significance | 0.842 | pathogenic | 해석 → | |
| R776H | Conflicting classifications of pathogeni | 0.649 | pathogenic | 해석 → | |
| R831H | Conflicting classifications of pathogeni | 0.117 | benign | 해석 → | |
| R836C | Conflicting classifications of pathogeni | 0.995 | pathogenic | 해석 → | |
| R973* | Pathogenic | — | 미적재 | 해석 → | |
| R98* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| S1071* | Pathogenic | — | 미적재 | 해석 → | |
| S768I | Pathogenic | 0.902 | pathogenic | ✓ | 해석 → |
| S768I | Pathogenic | 0.902 | pathogenic | ✓ | 해석 → |
| T790M | drug response | 0.966 | pathogenic | 해석 → | |
| T854I | Pathogenic | 0.998 | pathogenic | ✓ | 해석 → |
| V802I | Uncertain significance | 0.087 | benign | 해석 → | |
| V834L | Pathogenic | 0.992 | pathogenic | ✓ | 해석 → |
| V843I | Conflicting classifications of pathogeni | 0.182 | benign | 해석 → | |
| V845L | Conflicting classifications of pathogeni | 0.638 | pathogenic | 해석 → | |
| W477* | Pathogenic | — | 미적재 | 해석 → | |
| W608* | Pathogenic | — | 미적재 | 해석 → | |
| W817* | Pathogenic | — | 미적재 | 해석 → | |
| W905* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| W951* | Pathogenic | — | 미적재 | 해석 → | |
| Y113* | Pathogenic | — | 미적재 | 해석 → | |
| Y117* | Conflicting classifications of pathogeni | — | 미적재 | 해석 → | |
| Y801C | Conflicting classifications of pathogeni | 0.895 | pathogenic | 해석 → | |
| Y915* | Pathogenic | — | 미적재 | 해석 → | |
| *1211R | Uncertain significance | — | 미적재 | 해석 → | |
| A1000D | Uncertain significance | 0.224 | benign | 해석 → | |
| A1000T | Uncertain significance | 0.074 | benign | 해석 → | |
| A1000V | Likely benign | 0.116 | benign | ✓ | 해석 → |
| A1040E | Uncertain significance | 0.206 | benign | 해석 → | |
| A1040T | Likely benign | 0.070 | benign | ✓ | 해석 → |
| A1040V | Uncertain significance | 0.092 | benign | 해석 → | |
| A1048T | Uncertain significance | 0.063 | benign | 해석 → | |
| A1048V | Conflicting classifications of pathogeni | 0.086 | benign | 해석 → | |
| A1076D | Uncertain significance | 0.098 | benign | 해석 → | |
| A1076L | Uncertain significance | 0.066 | benign | 해석 → | |
| A1076P | Uncertain significance | 0.071 | benign | 해석 → | |
| A1076T | Uncertain significance | 0.060 | benign | 해석 → | |
| A1076V | Uncertain significance | 0.066 | benign | 해석 → | |
| A10E | Uncertain significance | 0.515 | ambiguous | 해석 → | |
| A10G | Uncertain significance | 0.099 | benign | 해석 → | |
| A10T | Uncertain significance | 0.196 | benign | 해석 → | |
| A10V | Uncertain significance | 0.140 | benign | 해석 → | |
| A1102S | Uncertain significance | 0.072 | benign | 해석 → | |
| A1102T | Conflicting classifications of pathogeni | 0.069 | benign | 해석 → | |
| A1118S | Uncertain significance | 0.069 | benign | 해석 → | |
| A1118T | Conflicting classifications of pathogeni | 0.062 | benign | 해석 → | |
| A1118V | Conflicting classifications of pathogeni | 0.062 | benign | 해석 → | |
| A1155G | Uncertain significance | 0.072 | benign | 해석 → | |
| A1158T | Uncertain significance | 0.068 | benign | 해석 → | |
| A1158V | Uncertain significance | 0.071 | benign | 해석 → | |
| A118D | Uncertain significance | 0.991 | pathogenic | 해석 → | |
| A118S | Uncertain significance | 0.111 | benign | 해석 → | |
| A118T | Uncertain significance | 0.475 | ambiguous | 해석 → | |
| A1192D | Uncertain significance | 0.451 | ambiguous | 해석 → | |
| A1192G | Uncertain significance | 0.176 | benign | 해석 → | |
| A1192T | Uncertain significance | 0.129 | benign | 해석 → | |
| A1192V | Uncertain significance | 0.156 | benign | 해석 → | |
| A1201E | Uncertain significance | 0.294 | benign | 해석 → | |
| A1201T | Conflicting classifications of pathogeni | 0.113 | benign | 해석 → | |
| A1201V | Uncertain significance | 0.150 | benign | 해석 → | |
| A120E | Uncertain significance | 0.898 | pathogenic | 해석 → | |
| A120T | Uncertain significance | 0.159 | benign | 해석 → | |
| A1210V | Conflicting classifications of pathogeni | 0.127 | benign | 해석 → | |
| A127T | Conflicting classifications of pathogeni | 0.065 | benign | 해석 → | |
| A127V | Conflicting classifications of pathogeni | 0.084 | benign | 해석 → | |
| A13E | Uncertain significance | 0.537 | ambiguous | 해석 → | |
| A13S | Uncertain significance | 0.159 | benign | 해석 → | |
| A13T | Conflicting classifications of pathogeni | 0.180 | benign | 해석 → | |
| A13V | Conflicting classifications of pathogeni | 0.092 | benign | 해석 → | |
| A147P | Uncertain significance | 0.567 | pathogenic | 해석 → | |
| A147S | Uncertain significance | 0.084 | benign | 해석 → | |
| A147T | Uncertain significance | 0.124 | benign | 해석 → | |
| A147V | Uncertain significance | 0.242 | benign | 해석 → | |
| A155D | Conflicting classifications of pathogeni | 0.138 | benign | 해석 → | |
| A155S | Uncertain significance | 0.064 | benign | 해석 → | |
| A155T | Uncertain significance | 0.066 | benign | 해석 → | |
| A155V | Likely benign | 0.069 | benign | ✓ | 해석 → |
| A16S | Uncertain significance | 0.155 | benign | 해석 → | |
| A16T | Uncertain significance | 0.183 | benign | 해석 → | |
| A17T | Uncertain significance | 0.161 | benign | 해석 → | |
| A17V | Conflicting classifications of pathogeni | 0.127 | benign | 해석 → | |
| A202V | Uncertain significance | 0.096 | benign | 해석 → | |
| A21S | Conflicting classifications of pathogeni | 0.080 | benign | 해석 → | |
| A21T | Conflicting classifications of pathogeni | 0.104 | benign | 해석 → | |
| A21V | Uncertain significance | 0.110 | benign | 해석 → | |
| A237T | Uncertain significance | 0.805 | pathogenic | 해석 → | |
| A238T | Uncertain significance | 0.502 | ambiguous | 해석 → | |
| A24D | Uncertain significance | 0.199 | benign | 해석 → | |
| A24S | Likely benign | 0.098 | benign | ✓ | 해석 → |
| A24T | Conflicting classifications of pathogeni | 0.187 | benign | 해석 → | |
| A289T | Uncertain significance | 0.610 | pathogenic | 해석 → | |
| A310G | Uncertain significance | 0.175 | benign | 해석 → | |
| A310V | Uncertain significance | 0.167 | benign | 해석 → | |
| A313T | Uncertain significance | 0.066 | benign | 해석 → | |
| A313V | Conflicting classifications of pathogeni | 0.080 | benign | 해석 → | |
| A353S | Uncertain significance | 0.099 | benign | 해석 → | |
| A409D | Uncertain significance | 0.456 | ambiguous | 해석 → | |
| A409S | Conflicting classifications of pathogeni | 0.095 | benign | 해석 → | |
| A419P | Uncertain significance | 0.229 | benign | 해석 → | |
| A419V | Uncertain significance | 0.205 | benign | 해석 → | |
| A439V | Uncertain significance | 0.749 | pathogenic | 해석 → | |
| A472E | Uncertain significance | 0.688 | pathogenic | 해석 → | |
| A472T | Uncertain significance | 0.157 | benign | 해석 → | |
| A501T | Uncertain significance | 0.074 | benign | 해석 → | |
| A508G | Uncertain significance | 0.092 | benign | 해석 → | |
| A508T | Uncertain significance | 0.067 | benign | 해석 → | |
| A566T | Uncertain significance | 0.070 | benign | 해석 → | |
| A583P | Uncertain significance | 0.865 | pathogenic | 해석 → | |
| A583V | Uncertain significance | 0.132 | benign | 해석 → | |
| A597S | Uncertain significance | 0.076 | benign | 해석 → | |
| A597V | Uncertain significance | 0.135 | benign | 해석 → | |
| A611S | Uncertain significance | 0.097 | benign | 해석 → | |
| A611T | Conflicting classifications of pathogeni | 0.121 | benign | 해석 → | |
| A611V | Uncertain significance | 0.163 | benign | 해석 → | |
| A613T | Conflicting classifications of pathogeni | 0.068 | benign | 해석 → | |
| A647P | Uncertain significance | 0.622 | pathogenic | 해석 → | |
| A647S | Uncertain significance | 0.192 | benign | 해석 → | |
| A647T | Uncertain significance | 0.168 | benign | 해석 → | |
| A647V | Uncertain significance | 0.182 | benign | 해석 → | |
| A653D | Uncertain significance | 0.908 | pathogenic | 해석 → | |
| A653T | Uncertain significance | 0.079 | benign | 해석 → | |
| A653V | Uncertain significance | 0.074 | benign | 해석 → | |
| A698V | Uncertain significance | 0.330 | benign | 해석 → | |
| A702G | Uncertain significance | 0.784 | pathogenic | 해석 → | |
| A702V | Uncertain significance | 0.666 | pathogenic | 해석 → | |
| A722S | Uncertain significance | 0.874 | pathogenic | 해석 → | |
| A722V | Conflicting classifications of pathogeni | 0.982 | pathogenic | 해석 → | |
| A743T | Uncertain significance | 0.987 | pathogenic | 해석 → | |
| A743V | Uncertain significance | 0.989 | pathogenic | 해석 → | |
| A750P | Uncertain significance | 0.870 | pathogenic | 해석 → | |
| A750V | Uncertain significance | 0.320 | benign | 해석 → | |
| A755T | Uncertain significance | 0.646 | pathogenic | 해석 → | |
| A763V | Uncertain significance | 0.973 | pathogenic | 해석 → | |
| A767S | Uncertain significance | 0.597 | pathogenic | 해석 → | |
| A767V | Uncertain significance | 0.989 | pathogenic | 해석 → | |
| A7D | Uncertain significance | 0.351 | ambiguous | 해석 → | |
| A7P | Uncertain significance | 0.125 | benign | 해석 → | |
| A7T | Likely benign | 0.167 | benign | ✓ | 해석 → |
| A822P | Uncertain significance | 0.999 | pathogenic | 해석 → | |
| A822S | Uncertain significance | 0.557 | ambiguous | 해석 → | |
| A822T | Uncertain significance | 0.988 | pathogenic | 해석 → | |
| A839T | Uncertain significance | 0.999 | pathogenic | 해석 → | |
| A840T | Conflicting classifications of pathogeni | 0.963 | pathogenic | 해석 → | |
| A859S | Uncertain significance | 0.645 | pathogenic | 해석 → | |
| A864T | Uncertain significance | 0.138 | benign | 해석 → | |
| A864V | Uncertain significance | 0.198 | benign | 해석 → | |
| A86S | Uncertain significance | 0.113 | benign | 해석 → | |
| A86T | Uncertain significance | 0.229 | benign | 해석 → | |
| A86V | Uncertain significance | 0.534 | ambiguous | 해석 → | |
| A871E | Uncertain significance | 0.899 | pathogenic | 해석 → | |
| A871G | Uncertain significance | 0.733 | pathogenic | 해석 → | |
| A871P | Uncertain significance | 0.986 | pathogenic | 해석 → | |
| A920D | Uncertain significance | 0.994 | pathogenic | 해석 → | |
| A920S | Uncertain significance | 0.457 | ambiguous | 해석 → | |
| A920T | Uncertain significance | 0.720 | pathogenic | 해석 → | |
| A920V | Uncertain significance | 0.825 | pathogenic | 해석 → | |
| A955P | Uncertain significance | 0.439 | ambiguous | 해석 → | |
| A955T | Uncertain significance | 0.579 | pathogenic | 해석 → | |
| A972D | Uncertain significance | 0.999 | pathogenic | 해석 → | |
| A972T | Uncertain significance | 0.953 | pathogenic | 해석 → |
AM 임계: 병원성 ≥ 0.564, 양성 < 0.34 (AlphaMissense 권장 컷오프, Cheng et al. Science 2023)
📚 데이터: NCBI ClinVar variant_summary (GRCh38, 최근 다운로드) + 우리 유전자 서브셋만 추출.