ClinVar 임상 비교
AlphaMissense AI 예측 vs ClinVar 실제 임상 분류 — 일치/불일치 분석
ClinVar 변이 (서브셋)
319,822
우리 보유 유전자만
커버 유전자
308
병원성/가능 변이
56,770
AM과 교차 가능
154,518
단백질 변이 추출
FOXC1: AM vs ClinVar 일치도
426 변이✓ 둘 다 병원성
33
✓ 둘 다 양성
6
⚠ CV=병원성 / AM=양성
1
⚠ CV=양성 / AM=병원성
1
— AM 미적재
385
AM ↔ ClinVar 비교 가능 변이 41건 중 39건 일치 / 2건 불일치 — 일치도 95.1%
변이별 비교
Max 500| 변이 | ClinVar 분류 | AM 점수 | AM 분류 | 일치 | |
|---|---|---|---|---|---|
| A342V | Uncertain significance | 0.137 | benign | 해석 → | |
| A85V | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| A90V | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| C135* | Pathogenic | — | 미적재 | 해석 → | |
| C135Y | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| D157V | Likely pathogenic | 0.993 | pathogenic | ✓ | 해석 → |
| E163* | Pathogenic | — | 미적재 | 해석 → | |
| E258* | Pathogenic/Likely pathogenic | — | 미적재 | 해석 → | |
| F112S | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| F136S | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| F162L | Conflicting classifications of pathogeni | 1.000 | pathogenic | 해석 → | |
| F162V | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| G121S | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| G165R | Conflicting classifications of pathogeni | 1.000 | pathogenic | 해석 → | |
| G380V | Likely pathogenic | 0.102 | benign | ⚠ | 해석 → |
| G455* | Pathogenic | — | 미적재 | 해석 → | |
| G59V | Likely pathogenic | 0.374 | ambiguous | 해석 → | |
| H128Q | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| I126M | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| I126S | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| I87M | Pathogenic | 0.998 | pathogenic | ✓ | 해석 → |
| L130F | Conflicting classifications of pathogeni | 1.000 | pathogenic | 해석 → | |
| L86F | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| L86R | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| N124K | Conflicting classifications of pathogeni | 1.000 | pathogenic | 해석 → | |
| N133K | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| P297S | Benign | 0.065 | benign | ✓ | 해석 → |
| P364S | Uncertain significance | 0.072 | benign | 해석 → | |
| P79Q | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| P79T | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| Q106* | Pathogenic | — | 미적재 | 해석 → | |
| Q120* | Pathogenic | — | 미적재 | 해석 → | |
| Q123* | Pathogenic | — | 미적재 | 해석 → | |
| Q2* | Likely pathogenic | — | 미적재 | 해석 → | |
| Q23* | Pathogenic | — | 미적재 | 해석 → | |
| Q238* | Pathogenic | — | 미적재 | 해석 → | |
| Q367* | Likely pathogenic | — | 미적재 | 해석 → | |
| Q467* | Pathogenic | — | 미적재 | 해석 → | |
| Q55* | Pathogenic | — | 미적재 | 해석 → | |
| Q70* | Pathogenic | — | 미적재 | 해석 → | |
| Q92* | Pathogenic | — | 미적재 | 해석 → | |
| Q92P | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| R127H | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| R127L | Pathogenic/Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| R127S | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| R170W | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| R173H | Likely pathogenic | 0.999 | pathogenic | ✓ | 해석 → |
| S131* | Pathogenic | — | 미적재 | 해석 → | |
| S131L | Pathogenic/Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| S131W | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| S422* | Pathogenic | — | 미적재 | 해석 → | |
| S48* | Pathogenic | — | 미적재 | 해석 → | |
| S82R | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| S82R | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| S82T | Pathogenic | 0.996 | pathogenic | ✓ | 해석 → |
| T88I | Conflicting classifications of pathogeni | 1.000 | pathogenic | 해석 → | |
| W122* | Pathogenic | — | 미적재 | 해석 → | |
| W152* | Pathogenic | — | 미적재 | 해석 → | |
| W152C | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| W152G | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| W152R | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| Y105* | Likely pathogenic | — | 미적재 | 해석 → | |
| Y151* | Pathogenic | — | 미적재 | 해석 → | |
| Y151* | Likely pathogenic | — | 미적재 | 해석 → | |
| Y353* | Pathogenic | — | 미적재 | 해석 → | |
| Y393* | Pathogenic/Likely pathogenic | — | 미적재 | 해석 → | |
| Y47* | Pathogenic/Likely pathogenic | — | 미적재 | 해석 → | |
| Y497* | Pathogenic | — | 미적재 | 해석 → | |
| Y64* | Pathogenic | — | 미적재 | 해석 → | |
| Y81H | Pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| Y83* | Pathogenic | — | 미적재 | 해석 → | |
| Y83H | Likely pathogenic | 1.000 | pathogenic | ✓ | 해석 → |
| A179G | Uncertain significance | 0.461 | ambiguous | 해석 → | |
| A179V | Uncertain significance | 0.126 | benign | 해석 → | |
| A243S | Likely benign | 0.080 | benign | ✓ | 해석 → |
| A243V | Uncertain significance | 0.098 | benign | 해석 → | |
| A244T | Uncertain significance | 0.081 | benign | 해석 → | |
| A245T | Uncertain significance | 0.081 | benign | 해석 → | |
| A251T | Uncertain significance | 0.070 | benign | 해석 → | |
| A252T | Uncertain significance | 0.077 | benign | 해석 → | |
| A252V | Uncertain significance | 0.099 | benign | 해석 → | |
| A253G | Uncertain significance | 0.103 | benign | 해석 → | |
| A288V | Uncertain significance | 0.084 | benign | 해석 → | |
| A28V | Uncertain significance | 0.337 | benign | 해석 → | |
| A291V | Uncertain significance | 0.073 | benign | 해석 → | |
| A296G | Uncertain significance | 0.077 | benign | 해석 → | |
| A296S | Uncertain significance | 0.064 | benign | 해석 → | |
| A299T | Uncertain significance | 0.071 | benign | 해석 → | |
| A30V | Uncertain significance | 0.314 | benign | 해석 → | |
| A324V | Uncertain significance | 0.114 | benign | 해석 → | |
| A326S | Uncertain significance | 0.069 | benign | 해석 → | |
| A32T | Uncertain significance | 0.127 | benign | 해석 → | |
| A336V | Uncertain significance | 0.141 | benign | 해석 → | |
| A33V | Uncertain significance | 0.208 | benign | 해석 → | |
| A342G | Conflicting classifications of pathogeni | 0.077 | benign | 해석 → | |
| A349T | Uncertain significance | 0.093 | benign | 해석 → | |
| A349V | Uncertain significance | 0.179 | benign | 해석 → | |
| A352T | Uncertain significance | 0.077 | benign | 해석 → | |
| A371V | Uncertain significance | 0.100 | benign | 해석 → | |
| A383G | Uncertain significance | 0.045 | benign | 해석 → | |
| A387P | Uncertain significance | 0.096 | benign | 해석 → | |
| A387S | Uncertain significance | 0.063 | benign | 해석 → | |
| A39S | Uncertain significance | 0.059 | benign | 해석 → | |
| A404V | Conflicting classifications of pathogeni | 0.307 | benign | 해석 → | |
| A415V | Uncertain significance | 0.072 | benign | 해석 → | |
| A423T | Uncertain significance | 0.068 | benign | 해석 → | |
| A42V | Uncertain significance | 0.220 | benign | 해석 → | |
| A464T | Uncertain significance | 0.081 | benign | 해석 → | |
| A465G | Uncertain significance | 0.071 | benign | 해석 → | |
| A478E | Uncertain significance | 0.620 | pathogenic | 해석 → | |
| A478T | Conflicting classifications of pathogeni | 0.112 | benign | 해석 → | |
| A486P | Uncertain significance | 0.181 | benign | 해석 → | |
| A488S | Uncertain significance | 0.105 | benign | 해석 → | |
| A489V | Uncertain significance | 0.218 | benign | 해석 → | |
| A490V | Uncertain significance | 0.206 | benign | 해석 → | |
| A493V | Uncertain significance | 0.187 | benign | 해석 → | |
| A495T | Uncertain significance | 0.097 | benign | 해석 → | |
| A53V | Uncertain significance | 0.200 | benign | 해석 → | |
| A61V | Conflicting classifications of pathogeni | 0.364 | ambiguous | 해석 → | |
| A90D | Uncertain significance | 1.000 | pathogenic | 해석 → | |
| A90T | Uncertain significance | 1.000 | pathogenic | 해석 → | |
| A94V | Uncertain significance | 0.839 | pathogenic | 해석 → | |
| C135S | Uncertain significance | 1.000 | pathogenic | 해석 → | |
| C529R | Uncertain significance | 0.997 | pathogenic | 해석 → | |
| D110E | Uncertain significance | 0.118 | benign | 해석 → | |
| D143N | Uncertain significance | 0.983 | pathogenic | 해석 → | |
| D178H | Conflicting classifications of pathogeni | 0.988 | pathogenic | 해석 → | |
| D178N | Uncertain significance | 0.880 | pathogenic | 해석 → | |
| D182N | Conflicting classifications of pathogeni | 0.682 | pathogenic | 해석 → | |
| D187H | Uncertain significance | 0.597 | pathogenic | 해석 → | |
| D187N | Uncertain significance | 0.253 | benign | 해석 → | |
| D210N | Uncertain significance | 0.083 | benign | 해석 → | |
| D225N | Uncertain significance | 0.732 | pathogenic | 해석 → | |
| D261G | Uncertain significance | 0.360 | ambiguous | 해석 → | |
| D311N | Uncertain significance | 0.901 | pathogenic | 해석 → | |
| D430N | Uncertain significance | 0.385 | ambiguous | 해석 → | |
| D481N | Uncertain significance | 0.545 | ambiguous | 해석 → | |
| D75N | Uncertain significance | 0.980 | pathogenic | 해석 → | |
| D96E | Uncertain significance | 0.159 | benign | 해석 → | |
| E185K | Uncertain significance | 0.870 | pathogenic | 해석 → | |
| E185Q | Uncertain significance | 0.634 | pathogenic | 해석 → | |
| E193D | Uncertain significance | 0.059 | benign | 해석 → | |
| E193K | Uncertain significance | 0.621 | pathogenic | 해석 → | |
| E327K | Uncertain significance | 0.687 | pathogenic | 해석 → | |
| E458K | Uncertain significance | 0.536 | ambiguous | 해석 → | |
| F546S | Uncertain significance | 0.922 | pathogenic | 해석 → | |
| G103R | Uncertain significance | 1.000 | pathogenic | 해석 → | |
| G147V | Uncertain significance | 1.000 | pathogenic | 해석 → | |
| G149D | Uncertain significance | 1.000 | pathogenic | 해석 → | |
| G14E | Uncertain significance | 0.988 | pathogenic | 해석 → | |
| G20S | Uncertain significance | 0.085 | benign | 해석 → | |
| G211D | Uncertain significance | 0.136 | benign | 해석 → | |
| G211S | Uncertain significance | 0.074 | benign | 해석 → | |
| G215S | Uncertain significance | 0.079 | benign | 해석 → | |
| G21C | Uncertain significance | 0.475 | ambiguous | 해석 → | |
| G231S | Uncertain significance | 0.448 | ambiguous | 해석 → | |
| G249R | Uncertain significance | 0.358 | ambiguous | 해석 → | |
| G249V | Uncertain significance | 0.112 | benign | 해석 → | |
| G270R | Uncertain significance | 0.691 | pathogenic | 해석 → | |
| G307S | Uncertain significance | 0.170 | benign | 해석 → | |
| G319R | Uncertain significance | 0.806 | pathogenic | 해석 → | |
| G319V | Uncertain significance | 0.295 | benign | 해석 → | |
| G331R | Uncertain significance | 0.647 | pathogenic | 해석 → | |
| G331S | Uncertain significance | 0.067 | benign | 해석 → | |
| G343R | Uncertain significance | 0.751 | pathogenic | 해석 → | |
| G34R | Uncertain significance | 0.873 | pathogenic | 해석 → | |
| G351R | Uncertain significance | 0.748 | pathogenic | 해석 → | |
| G351S | Uncertain significance | 0.090 | benign | 해석 → | |
| G35A | Uncertain significance | 0.142 | benign | 해석 → | |
| G35D | Uncertain significance | 0.768 | pathogenic | 해석 → | |
| G35S | Uncertain significance | 0.095 | benign | 해석 → | |
| G36D | Uncertain significance | 0.775 | pathogenic | 해석 → | |
| G372C | Uncertain significance | 0.185 | benign | 해석 → | |
| G375C | Uncertain significance | 0.182 | benign | 해석 → | |
| G376D | Uncertain significance | 0.297 | benign | 해석 → | |
| G379R | Uncertain significance | 0.400 | ambiguous | 해석 → | |
| G382E | Uncertain significance | 0.245 | benign | 해석 → | |
| G385E | Uncertain significance | 0.262 | benign | 해석 → | |
| G386A | Uncertain significance | 0.071 | benign | 해석 → | |
| G386D | Uncertain significance | 0.260 | benign | 해석 → | |
| G386S | Uncertain significance | 0.077 | benign | 해석 → | |
| G389C | Uncertain significance | 0.203 | benign | 해석 → | |
| G389D | Uncertain significance | 0.319 | benign | 해석 → | |
| G389S | Uncertain significance | 0.078 | benign | 해석 → | |
| G410C | Uncertain significance | 0.128 | benign | 해석 → | |
| G410D | Uncertain significance | 0.431 | ambiguous | 해석 → | |
| G417E | Uncertain significance | 0.213 | benign | 해석 → | |
| G418A | Uncertain significance | 0.066 | benign | 해석 → | |
| G418V | Uncertain significance | 0.077 | benign | 해석 → | |
| G421D | Uncertain significance | 0.239 | benign | 해석 → | |
| G448S | Uncertain significance | 0.074 | benign | 해석 → | |
| G449S | Uncertain significance | 0.081 | benign | 해석 → | |
| G450A | Uncertain significance | 0.077 | benign | 해석 → | |
| G452D | Uncertain significance | 0.274 | benign | 해석 → | |
| G454A | Uncertain significance | 0.077 | benign | 해석 → | |
| G468A | Uncertain significance | 0.309 | benign | 해석 → | |
| G468D | Uncertain significance | 0.770 | pathogenic | 해석 → | |
| G479D | Uncertain significance | 0.661 | pathogenic | 해석 → | |
| G480R | Uncertain significance | 0.875 | pathogenic | 해석 → | |
| G483A | Uncertain significance | 0.154 | benign | 해석 → |
AM 임계: 병원성 ≥ 0.564, 양성 < 0.34 (AlphaMissense 권장 컷오프, Cheng et al. Science 2023)
📚 데이터: NCBI ClinVar variant_summary (GRCh38, 최근 다운로드) + 우리 유전자 서브셋만 추출.